Li X, Oghi KA, Zhang J, Krones A, Bush KT, Glass CK, Nigam SK, Aggarwal AK, Maas R, Rose DW, Rosenfeld MG. 
Eya protein phosphatase activity regulates Six1-Dach-Eya transcriptional effects in mammalian organogenesis. 
Nature. 2003 Nov 20;426(6964):247-54.

Vanamee ES, Hsieh P, Zhu Z, Yates D, Garman E, Xu S, Aggarwal AK. 
Glucocorticoid receptor-like Zn(Cys)4 motifs in BslI restriction endonuclease.
J Mol Biol. 2003 Nov 28;334(3):595-603. 
  
Edwards TA, Wilkinson BD, Wharton RP, Aggarwal AK.  
Model of the brain tumor-Pumilio translation repressor complex.
Genes Dev. 2003 Oct 15;17(20):2508-13. 

James JA, Escalante CR, Yoon-Robarts M, Edwards TA, Linden RM, Aggarwal AK. 
Crystal structure of the SF3 helicase from adeno-associated virus type 2.  
Structure (Camb). 2003 Aug;11(8):1025-35. 

Viadiu H, Vanamee ES, Jacobson EM, Schildkraut I, Aggarwal AK. 
Crystallization of restriction endonuclease SfiI in complex with DNA.
Acta Crystallogr D Biol Crystallogr. 2003 Aug;59(Pt 8):1493-5. 

Green JB, Gardner CD, Wharton RP, Aggarwal AK.  
RNA recognition via the SAM domain of Smaug.
Mol Cell. 2003 Jun;11(6):1537-48. 

Sun J, Viadiu H, Aggarwal AK, Weinstein H.
Energetic and Structural Considerations for the Mechanism of Protein Sliding along DNA in
 the Nonspecific BamHI-DNA Complex.
Biophys J 2003 May;84(5):3317-25

Johnson RE, Trincao J, Aggarwal AK, Prakash S, Prakash L.
Deoxynucleotide triphosphate binding mode conserved in Y family DNA polymerases.
Mol Cell Biol 2003 Apr;23(8):3008-12

Aggarwal AK, Doudna JA.Protein-nucleic acid interactions.
Curr Opin Struct Biol 2003 Feb;13(1):3-5

Escalante CR, Brass AL, Pongubala JM, Shatova E, Shen L, Singh H, Aggarwal AK.
Crystal structure of PU.1/IRF-4/DNA ternary complex.
Mol Cell 2002 Nov;10(5):1097-105

Kumar V, Carlson JE, Ohgi KA, Edwards TA, Rose DW, Escalante CR, Rosenfeld MG, Aggarwal AK.
Transcription corepressor CtBP is an NAD(+)-regulated dehydrogenase.
Mol Cell 2002 Oct;10(4):857-69

Dean KA, Aggarwal AK, Wharton RP.
Translational repressors in Drosophila.
Trends Genet 2002 Nov;18(11):572-7

Green JB, Edwards TA, Trincao J, Escalante CR, Wharton RP, Aggarwal AK.
Crystallization and characterization of Smaug: a novel RNA-binding motif.
Biochem Biophys Res Commun 2002 Oct 11;297(5):1085-8

Escalante CR, Shen L, Escalante MC, Brass AL, Edwards TA, Singh H, Aggarwal AK.
Crystallization and characterization of PU.1/IRF-4/DNA ternary complex.
J Struct Biol 2002 Jul;139(1):55-9

Escalante CR, Shen L, Thanos D, Aggarwal AK.
Structure of NF-kappaB p50/p65 heterodimer bound to the PRDII DNA element from the
 interferon-beta promoter..
Structure (Camb) 2002 Mar;10(3):383-91

Trincao J, Johnson RE, Escalante CR, Prakash S, Prakash L, Aggarwal AK. 
Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis. 
Mol Cell. 2001 Aug;8(2):417-26.

Vanamee ES, Santagata S, Aggarwal AK. 
FokI requires two specific DNA sites for cleavage. 
J Mol Biol. 2001 May 25;309(1):69-78.

Edwards TA, Pyle SE, Wharton RP, Aggarwal AK. 
Structure of Pumilio reveals similarity between RNA and peptide binding motifs. 
Cell. 2001 Apr 20;105(2):281-9.

Edwards TA, Trincao J, Escalante CR, Wharton RP, Aggarwal AK. 
Crystallization and characterization of Pumilo: a novel RNA binding protein. 
J Struct Biol. 2000 Dec;132(3):251-4.

Yoon M, Smith DH, Ward P, Medrano FJ, Aggarwal AK, Linden RM. 
Amino-terminal domain exchange redirects origin-specific interactions of adeno-associated virus rep78 in vitro. 
J Virol. 2001 Apr;75(7):3230-9.

Lukacs CM, Aggarwal AK. 
BglII and MunI: what a difference a base makes. 
Curr Opin Struct Biol. 2001 Feb;11(1):14-8. 

Lukacs CM, Kucera R, Schildkraut I, Aggarwal AK. 
Structure of free BglII reveals an unprecedented scissor-like motion for opening an endonuclease. 
Nat Struct Biol. 2001 Feb;8(2):126-30.

Senger K, Merika M, Agalioti T, Yie J, Escalante CR, Chen G, Aggarwal AK, Thanos D. 
Gene repression by coactivator repulsion. 
Mol Cell. 2000 Oct;6(4):931-7.

Scully KM, Jacobson EM, Jepsen K, Lunyak V, Viadiu H, Carriere C, Rose DW, Hooshmand F, Aggarwal AK, Rosenfeld MG.
Allosteric effects of Pit-1 DNA sites on long-term repression in cell type specification. 
Science. 2000 Nov 10;290(5494):1127-31.

Viadiu H, Aggarwal AK. 
Structure of BamHI bound to nonspecific DNA: a model for DNA sliding. 
Mol Cell. 2000 May;5(5):889-95.

Qiu L, Escalante CR, Aggarwal AK, Wilson PD, Burrow CR. 
Monomeric midkine induces tumor cell proliferation in the absence of cell-surface proteoglycan binding. 
Biochemistry. 2000 May 23;39(20):5977-87.

Viadiu H, Kucera R, Schildkraut I, Aggarwal AK. 
Crystallization of restriction endonuclease BamHI with nonspecific DNA.
J Struct Biol. 2000 May;130(1):81-5.

Lukacs CM, Kucera R, Schildkraut I, Aggarwal AK. 
Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolution. 
Nat Struct Biol. 2000 Feb;7(2):134-40.

Dhalluin C, Carlson JE, Zeng L, He C, Aggarwal AK, Zhou MM. 
1H, 15N and 13C resonance assignments for the bromodomain of the histone acetyltransferase P/CAF. 
J Biomol NMR. 1999 Jul;14(3):291-2. 

Dasen JS, O'Connell SM, Flynn SE, Treier M, Gleiberman AS, Szeto DP, Hooshmand F, Aggarwal AK, Rosenfeld MG. 
Reciprocal interactions of Pit1 and GATA2 mediate signaling gradient-induced determination of pituitary cell types. 
Cell. 1999 May 28;97(5):587-98.

Dhalluin C, Carlson JE, Zeng L, He C, Aggarwal AK, Zhou MM.
Structure and ligand of a histone acetyltransferase bromodomain. 
Nature. 1999 Jun 3;399(6735):491-6.

Passner JM, Ryoo HD, Shen L, Mann RS, Aggarwal AK. 
Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex. 
Nature. 1999 Feb 25;397(6721):714-9.

Viadiu H, Aggarwal AK. 
The role of metals in catalysis by the restriction endonuclease BamHI. 
Nat Struct Biol. 1998 Oct;5(10):910-6.

Xu L, Lavinsky RM, Dasen JS, Flynn SE, McInerney EM, Mullen TM, Heinzel T, Szeto D, Korzus E, Kurokawa R, Aggarwal AK, Rose DW, Glass CK, Rosenfeld MG. 
Signal-specific co-activator domain requirements for Pit-1 activation. 
Nature. 1998 Sep 17;395(6699):301-6.

Bitinaite J, Wah DA, Aggarwal AK, Schildkraut I. 
FokI dimerization is required for DNA cleavage. 
Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10570-5.

Wah DA, Bitinaite J, Schildkraut I, Aggarwal AK. 
Structure of FokI has implications for DNA cleavage. 
Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10564-9.

Aggarwal AK, Wah DA. 
Novel site-specific DNA endonucleases. 
Curr Opin Struct Biol. 1998 Feb;8(1):19-25. Review.

Escalante CR, Yie J, Thanos D, Aggarwal AK. 
Structure of IRF-1 with bound DNA reveals determinants of interferon regulation. 
Nature. 1998 Jan 1;391(6662):103-6.

Escalante CR, Yie J, Thanos D, Aggarwal AK. 
Expression, purification, and co-crystallization of IRF-I bound to the interferon-beta element PRDI. 
FEBS Lett. 1997 Sep 8;414(2):219-20.

Wah DA, Hirsch JA, Dorner LF, Schildkraut I, Aggarwal AK. 
Structure of the multimodular endonuclease FokI bound to DNA. 
Nature. 1997 Jul 3;388(6637):97-100.

Aggarwal AK. 
Homing in on intron-encoded endonucleases. 
Nat Struct Biol. 1997 Jun;4(6):423-4. No abstract available.

Hirsch JA, Wah DA, Dorner LF, Schildkraut I, Aggarwal AK. 
Crystallization and preliminary X-ray analysis of restriction endonuclease FokI bound to DNA. 
FEBS Lett. 1997 Feb 17;403(2):136-8.

Jacobson EM, Li P, Leon-del-Rio A, Rosenfeld MG, Aggarwal AK. 
Structure of Pit-1 POU domain bound to DNA as a dimer: unexpected arrangement and flexibility. 
Genes Dev. 1997 Jan 15;11(2):198-212.